Description of the proteins involved in amonabactins biosynthesis that are encoded by the genes of the amonabactin cluster in
Abstract
This chapter provides an overview of the current understanding of iron acquisition mechanisms in Aeromonas. Two mechanisms, heme utilization and siderophore synthesis, have been extensively studied. All Aeromonas species can use heme to get iron, a mechanism facilitated by the production of hemolysins that release heme-containing molecules from host tissues. The predominant siderophore produced by most Aeromonas spp. is amonabactin, comprising a family of four different compounds. Amonabactins are internalized via FstC, an outer membrane transporter (OMT) characterized by a broad ligand plasticity. In addition to amonabactin, A. salmonicida also produces the siderophore acinetobactin, which is transported through FstB. Notably, both siderophores are concurrently produced, sharing part of the biosynthetic pathways. OMTs involved in iron acquisition hold a potential utility as tools for identification and as antigens for novel vaccines. Furthermore, synthetic derivatives of siderophores could serve as promising candidates for the development of novel antimicrobials, leveraging their specific internalization through OMTs.
Keywords
- Aeromonas
- iron uptake
- siderophores
- amonabactin
- acinetobactin
- heme uptake
- outer membrane transporters
- vaccines
1. Introduction
Within the
Iron is a crucial element for the metabolism of most microorganisms, but its assimilable forms are often scarce in biological environments due to its -chemical properties. This scarcity extends to animal tissues, where most iron is tightly bound to iron-containing proteins or heme-containing proteins. Consequently, bacteria have developed sophisticated mechanisms to acquire iron from the environment and from their hosts, particularly in the case of animal pathogens. These mechanisms for iron acquisition are widely recognized as essential for the survival of bacterial pathogens within their hosts [1]. It is now understood that they play a significant role in bacterial virulence and contribute substantially to the development of infectious diseases, but they also play relevant roles in microbial ecology [2]. Within bacterial cells, iron levels are strictly controlled through diverse regulatory mechanisms since they are crucial for keeping many cell functions, but at the same time, an excess of iron is toxic [1]. Besides the role of iron in the cell metabolism, iron plays a key role in regulating virulence determinants, being at the same time a nutritional and a regulatory element [3]. Regulation usually occurs at the transcriptional level through the global transcriptional regulator Fur (ferric uptake regulator) and iron-responsive small regulatory noncoding RNAs. Fur and these regulatory RNAs can regulate, either directly or indirectly, many virulence determinants of pathogenic bacteria, such as invasion of eukaryotic cells, toxin production, type VI secretion systems (T6SS), motility, quorum sensing, stress resistance or biofilm formation [3]. It has been recently shown that Fur functions as an activator of the T6SS that mediates virulence in
One of the primary strategies employed by microorganisms to acquire iron is through the synthesis and secretion of siderophores. Siderophores are low-molecular-weight Fe(III) chelators with diverse structures that efficiently extract iron from iron-binding proteins or other iron-containing compounds. They then enter the cell through specific transport proteins in the cell envelope, including outer membrane cognate receptors [1, 5]. The synthesis of siderophores is a complex process that typically involves a complete set of dedicated genes encoding the necessary biosynthetic enzymes. Nonribosomal peptide synthetases (NRPS) are often the main type of enzymes involved in the synthesis of many siderophores. NRPS enzymes are multimodule and multicatalytic, assembling the different residues to form the final compound [5, 6, 7]. By analyzing the amino acid sequences of these enzymes and comparing them with other known NRPSs, it is possible, to some extent, to predict the residues that will be incorporated into the synthesized siderophore. This provides important insights into the structure of the compound synthesized.
Due to their prevalence in the host, heme and heme-containing proteins can also serve as a viable iron source for invading microorganisms. Consequently, one of the primary mechanisms employed by Gram-negative bacterial pathogens to acquire iron involves the utilization of heme or heme-containing proteins derived from host tissues [8]. Despite the high affinity of siderophores for iron binding, they are unable to extract iron from heme. Thus, Gram-negative bacterial pathogens possess the capability to acquire iron from free heme or heme proteins through mechanisms independent of siderophores. However,
In the genus
2. Utilization of heme by Aeromonas spp.
The initial evidence indicating that
Our research group demonstrated that
The heme uptake gene cluster in
In A.
Maltz et al. [13] identified in an
3. Siderophores produced by Aeromonas
The first data about siderophore production by
![](/media/chapter/a043Y000010Jz8SQAS/a09Tc0000002rWUIAY/media/F1.png)
Figure 1.
Structure of the amonabactins produced as siderophores by most species of
Analyzing additional siderophore-producing isolates of
Amonabactins are also produced by virulent strains of
Homology to Amonabactin cluster from (%aa identity, %aa similarity) | |||
---|---|---|---|
Locus (No aa) | Encoded protein, description | ||
ASA_1838 (392) | EntC, Isochorismate synthase | WP_011706310.1 | (87, 92) |
ASA_1839 (556) | EntE, Siderophore synthase component E | WP_011706309.1 | (88, 92) |
ASA_1840 (302) | EntB, Isochorismatase | WP_011706308.1 | (93, 95) |
ASA_1841 (1029) | AmoF, Nonribosomal peptide synthetase | WP_011706307.1 | (91, 94) |
ASA_1842 (259) | EntA, 2,3-dihydroxybenzoate-2,3-dehydrogenase | WP_011706306.1 | (94, 95) |
ASA_1843 (2078) | AmoG, Nonribosomal peptide synthetase | WP_011706305.1 | (85, 89) |
ASA_1844 (536) | AmoH, Nonribosomal peptide synthetase | WP_011706304.1 | (86, 90) |
ASA_1845 (314) | Periplasmic binding protein | WP_011705834.1 | (94, 96) |
ASA_1846 (392) | AmoD, Phosphopantetheinyl transferase | WP_011705835.1 | (71, 78) |
ASA_1847 (271) | ABC transporter, ATP-binding protein | WP_011705836.1 | (93, 95) |
ASA_1848 (351) | ABC transporter, permease | WP_011705837.1 | (92, 96) |
ASA_1849 (338) | ABC transporter, permease | WP_011705838.1 | (97, 98) |
ASA_1850 (657) | TonB-dependent siderophore receptor | WP_011705839.1 | (94, 98) |
ASA_1851 (395) | Major facilitator family transporter | WP_011705840.1 | (92, 95) |
Table 1.
Although most
![](/media/chapter/a043Y000010Jz8SQAS/a09Tc0000002rWUIAY/media/F2.png)
Figure 2.
Structure of acinetobactin, a siderophore produced by
When comparing the genomes of
![](/media/chapter/a043Y000010Jz8SQAS/a09Tc0000002rWUIAY/media/F3.png)
Figure 3.
Schematic pathway for the biosynthesis of siderophores acinetobactin and amonabactin in
4. Siderophore outer membrane transporters in Aeromonas
The first works which described iron uptake mechanisms in
As above mentioned,
![](/media/chapter/a043Y000010Jz8SQAS/a09Tc0000002rWUIAY/media/F4.png)
Figure 4.
Transport of acinetobactin and several derivatives through the outer membrane transporter FstB in
Transport of ferri-siderophores and heme to the cytoplasm requires other components besides OMTs. Usually, an intermediate periplasmic binding protein (PBP) and ABC transporters located in the cytoplasmic membrane are essential components. Besides, transport from outer membrane to periplasm requires energy transduction from the cytoplasm through the TonB system. All siderophore and heme OMTs are TonB-dependent transporters (TBDTs) [1, 5]. Genes encoding PBPs and ABC transporters are usually part of the gene clusters involved in siderophore synthesis and transport. Nevertheless, the precise mechanisms governing the operation of these components remain inadequately understood across all species of
Transporters for other exogenous siderophores like enterobactin, ferrichrome, or desferrioxamine are also present in
5. Biotechnological applications of iron uptake components
5.1 Aeromonas detection by PCR
Since OMTs involved in siderophore acquisition are usually specific, they have proved to be good candidates for specific PCR-based detection of
5.2 Vaccines
OMTs of siderophores can be also used as efficient candidates for the development of subunit vaccines [29]. Recent works with
5.3 Fluorescent probes
Amonabactins, produced by
![](/media/chapter/a043Y000010Jz8SQAS/a09Tc0000002rWUIAY/media/F5.png)
Figure 5.
Fluorescent probe AMB-SRB based on amonabactin conjugated with sulforhodamine B (left) and
Additionally, the AMB-SRB fluorescent probe was successfully used to detect and follow an
6. Conclusions
In the genus
Acknowledgments
Work in the author’s laboratory was funded by several grants from MCIN/AEI/10.13039/501100011033 (AEI, Spanish State Agency for Research) and the European Union “FEDER Program: A way to make Europe”. Work was also supported by grant ED431C 2022/23, from Xunta de Galicia.
This study forms part of the Marine Science Programme (ThinkInAzul) supported by Ministerio de Ciencia e Innovación and Xunta de Galicia with funding from European Union NextGenerationEU (PRTR-C17.I1) and European Maritime and Fisheries Fund.
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